Refactor: Data directory structure, R2 backup, and fixed branch strategy in workflows#29
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Changes: - Reorganize file structure: data/sfs_json/ and data/md-markers/ - Add Cloudflare R2 backup for JSON files (redundancy) - Make git commits configurable (enable_git_commit input) - Add smart fallback in html-export (git first, R2 as backup) - Remove gitignore exceptions for cleaner config This provides better organization, permanent R2 backup, and flexibility to disable git commits when only R2 storage is needed.
Changes: - Replace timestamped branches with fixed branch (workflow-artifact-data) - Add automatic PR lifecycle management (close old, create new) - Make both fetch-sfs and upcoming-changes use same branch - Simplify html-export trigger to always use fixed branch Benefits: - Eliminates branch proliferation - Single coordination point for data updates - No manual cleanup needed - Temporal branches remain separate
marcarl
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marcarl
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Summary
This PR modernizes the SFS workflow architecture with three major improvements:
data/directory structure for all committed filesChanges
📁 New Directory Structure
data/sfs_json/- Source JSON files (committed to git + backed up to R2)data/md-markers/- Markdown with selex tags (committed to git)output/- Generated files (ignored in git, HTML goes to R2)☁️ Cloudflare R2 Backup
🔄 Fixed Branch Strategy (NEW)
workflow-artifact-datainstead of timestamped branches⚙️ Configurable Git Commits
enable_git_commit(default: true) - Enable/disable git commitsbranch_name(default:workflow-artifact-data) - Configurable branch nameBenefits
✅ Better organization - All source data in
data/, generated inoutput/✅ Permanent backup - JSON files in both git and R2
✅ No branch cleanup needed - Single fixed branch, reused on each run
✅ Simplified coordination - All workflows use same branch
✅ Clear naming -
md-markersshows selex tags includedBefore/After
Testing